iota2.Iota2Cluster

Iota2Cluster.py allow user to deploy iota2 on HPC architecture

check ‘Iota2Cluster.py -h’ for options

Functions

ensure_dir(dirname[, raise_exe])	Ensure that a named directory exists; if it does not, attempt to create it.
get_iota2_project_dir()
get_qsub_cmd(cfg, config_ressources, ...)	build qsub cmd to launch iota2 on HPC
get_ram(ram)	usage return ram in gb ram [param] [str]
main()	Function to create conda entry point
run_cluster(parsed_args)	launch iota2 on HPC

Classes

Popen(args[, bufsize, executable, stdin, ...])	Execute a child program in a new process.
workflow_merger(builders_list, cfg, ...[, ...])	class dedicated to merge i2_sequence_builder objects